initial

Dockerfile

+FROM centos
+
+RUN yum -y install epel-release
+RUN yum -y update
+RUN yum -y install gcc gcc-c++ gcc-gfortran \
+                   git curl make zlib-devel bzip2 bzip2-devel \
+                   readline-devel sqlite sqlite-devel openssl \
+                   openssl-devel patch libjpeg libpng12 libX11 \
+                   which libXpm libXext curlftpfs wget libgfortran file \
+                   ruby-devel fpm rpm-build \
+                   ncurses-devel \
+                   libXt-devel libX11-devel libXpm-devel libXft-devel libXext-devel \
+                   cmake openssl-devel pcre-devel mesa-libGL-devel mesa-libGLU-devel glew-devel ftgl-devel \
+                   mysql-devel fftw-devel cfitsio-devel graphviz-devel avahi-compat-libdns_sd-devel libldap-dev python-devel libxml2-devel gsl-static \
+                   compat-gcc-44 compat-gcc-44-c++ compat-gcc-44-c++.gfortran \
+                   perl-ExtUtils-MakeMaker \
+                   net-tools strace sshfs sudo iptables
+
+RUN ln -s /usr/lib64/libpcre.so.1 /usr/lib64/libpcre.so.0
+RUN curl -s https://packagecloud.io/install/repositories/github/git-lfs/script.rpm.sh | bash && yum -y install git-lfs
+RUN cp -fv /usr/bin/gfortran /usr/bin/g95
+
+ARG uid
+RUN groupadd -r integral -g $uid && useradd -u $uid -r -g integral integral && \
+    mkdir /home/integral /data && \
+    chown -R integral:integral /home/integral /data
+
+USER integral
+
+## pyenv
+
+WORKDIR /home/integral
+
+RUN git clone git://github.com/yyuu/pyenv.git .pyenv
+
+ENV HOME  /home/integral
+ENV PYENV_ROOT $HOME/.pyenv
+ENV PATH $PYENV_ROOT/shims:$PYENV_ROOT/bin:$PATH
+
+RUN export PYTHON_CONFIGURE_OPTS="--enable-shared" && pyenv install 2.7.12
+RUN pyenv global 2.7.12
+RUN pyenv rehash
+
+RUN pip install pip --upgrade
+RUN pip install future
+RUN pip install numpy scipy astropy matplotlib
+
+## install heasoft
+
+ADD heasoft_init.sh .
+
+# root
+
+RUN cd / && \
+    wget https://root.cern.ch/download/root_v5.34.26.Linux-slc6_amd64-gcc4.4.tar.gz && \
+    tar xvzf root_v5.34.26.Linux-slc6_amd64-gcc4.4.tar.gz && \
+    rm -f root_v5.34.26.Linux-slc6_amd64-gcc4.4.tar.gz 
+
+# heasoft
+
+RUN cd / && \
+    wget https://www.isdc.unige.ch/~savchenk/gitlab-ci/savchenk/osa-build-heasoft-binary-tarball/CentOS_7.5.1804_x86_64/heasoft-CentOS_7.5.1804_x86_64.tar.gz && \
+    tar xvzf heasoft-CentOS_7.5.1804_x86_64.tar.gz && \
+    rm -fv  heasoft-CentOS_7.5.1804_x86_64.tar.gz
+
+# OSA
+
+RUN cd / && \
+    wget https://www.isdc.unige.ch/~savchenk/gitlab-ci/savchenk/osa-build-binary-tarball/CentOS_7.5.1804_x86_64/osa-CentOS_7.5.1804_x86_64.tar.gz && \
+    tar xvzf osa-CentOS_7.5.1804_x86_64.tar.gz && \
+    rm -fv  osa-CentOS_7.5.1804_x86_64.tar.gz
+
+# prep OSA
+# prep data
+
+RUN mkdir -pv /data/rep_base_prod/aux /data/ic_tree_current/ic /data/ic_tree_current/idx /data/resources /data/rep_base_prod/cat /data/rep_base_prod/ic /data/rep_base_prod/idx && \
+    chown -R integral:integral /data/rep_base_prod/aux /data/ic_tree_current/ic /data/ic_tree_current/idx /data/resources /data/rep_base_prod/cat /data/rep_base_prod/ic /data/rep_base_prod/idx
+
+RUN mkdir -pv /host_var; chown integral:integral /host_var &&  \
+    mkdir -pv /data/rep_base_prod; chown integral:integral /data/rep_base_prod 
+USER integral
+
+# pfiles
+
+RUN rm -rf /home/integral/pfiles
+
+# jupyter
+
+RUN mkdir -p /home/integral/.jupyter/
+ADD jupyter_notebook_config.json /home/integral/.jupyter/jupyter_notebook_config.json
+EXPOSE 8888
+
+ADD init.sh
+

init.sh

+export HEADAS=/heasoft/x86_64-unknown-linux-gnu-libc2.17/
+source $HEADAS/headas-init.sh
+
+rm -rf $HOME/pfiles
+export ISDC_ENV=/osa
+source $ISDC_ENV/bin/isdc_init_env.sh
+
+export CURRENT_IC=/data/ic_tree_current
+export REP_BASE_PROD=/data/rep_base_prod
+
+export F90=gfortran #f95
+export F95=gfortran #f95
+export F77=gfortran #f95
+export CC="gcc44" # -Df2cFortran"
+export CXX="g++44" # -Df2cFortran"
+source $HOME/root/bin/thisroot.sh
+
+
+source heasoft_init.sh
+
+sh setup_curlftpfs.sh
+mkdir -p /data/rep_base_prod/scw
+
+echo "mounting.."
+#curlftpfs -o nonempty ftp://isdcarc.unige.ch/arc/rev_3/aux/ /data/rep_base_prod/aux
+#curlftpfs -o nonempty ftp://isdcarc.unige.ch/arc/rev_3/scw/ /data/rep_base_prod/scw
+
+
+#ls /data/rep_base_prod/scw/0665
+#ls -l /data/ic_tree_current/ic/ibis/mod/isgr_mask_mod_0003.fits
+
+#ls -l /data/rep_base_prod/scw/0665/066500230010.001
+
+