run

Dockerfile

@@ -20,75 +20,29 @@ RUN ln -s /usr/lib64/libpcre.so.1 /usr/lib64/libpcre.so.0
 RUN curl -s https://packagecloud.io/install/repositories/github/git-lfs/script.rpm.sh | bash && yum -y install git-lfs
 RUN cp -fv /usr/bin/gfortran /usr/bin/g95
 
-ARG uid
-RUN groupadd -r integral -g $uid && useradd -u $uid -r -g integral integral && \
-    mkdir /home/integral /data && \
-    chown -R integral:integral /home/integral /data
-
-USER integral
-
-## pyenv
-
-WORKDIR /home/integral
-
-RUN git clone git://github.com/yyuu/pyenv.git .pyenv
-
-ENV HOME  /home/integral
-ENV PYENV_ROOT $HOME/.pyenv
-ENV PATH $PYENV_ROOT/shims:$PYENV_ROOT/bin:$PATH
-
-RUN export PYTHON_CONFIGURE_OPTS="--enable-shared" && pyenv install 2.7.12
-RUN pyenv global 2.7.12
-RUN pyenv rehash
-
-RUN pip install pip --upgrade
-RUN pip install future
-RUN pip install numpy scipy astropy matplotlib
-
-## install heasoft
-
-ADD heasoft_init.sh .
 
 # root
 
-RUN cd / && \
+RUN cd /opt && \
     wget https://root.cern.ch/download/root_v5.34.26.Linux-slc6_amd64-gcc4.4.tar.gz && \
     tar xvzf root_v5.34.26.Linux-slc6_amd64-gcc4.4.tar.gz && \
     rm -f root_v5.34.26.Linux-slc6_amd64-gcc4.4.tar.gz 
 
 # heasoft
 
-RUN cd / && \
+RUN cd /opt && \
     wget https://www.isdc.unige.ch/~savchenk/gitlab-ci/savchenk/osa-build-heasoft-binary-tarball/CentOS_7.5.1804_x86_64/heasoft-CentOS_7.5.1804_x86_64.tar.gz && \
     tar xvzf heasoft-CentOS_7.5.1804_x86_64.tar.gz && \
+    pwd && \
     rm -fv  heasoft-CentOS_7.5.1804_x86_64.tar.gz
 
 # OSA
 
-RUN cd / && \
+RUN cd /opt && \
     wget https://www.isdc.unige.ch/~savchenk/gitlab-ci/savchenk/osa-build-binary-tarball/CentOS_7.5.1804_x86_64/osa-CentOS_7.5.1804_x86_64.tar.gz && \
     tar xvzf osa-CentOS_7.5.1804_x86_64.tar.gz && \
     rm -fv  osa-CentOS_7.5.1804_x86_64.tar.gz
 
-# prep OSA
-# prep data
-
-RUN mkdir -pv /data/rep_base_prod/aux /data/ic_tree_current/ic /data/ic_tree_current/idx /data/resources /data/rep_base_prod/cat /data/rep_base_prod/ic /data/rep_base_prod/idx && \
-    chown -R integral:integral /data/rep_base_prod/aux /data/ic_tree_current/ic /data/ic_tree_current/idx /data/resources /data/rep_base_prod/cat /data/rep_base_prod/ic /data/rep_base_prod/idx
-
-RUN mkdir -pv /host_var; chown integral:integral /host_var &&  \
-    mkdir -pv /data/rep_base_prod; chown integral:integral /data/rep_base_prod 
-USER integral
-
-# pfiles
-
-RUN rm -rf /home/integral/pfiles
-
-# jupyter
-
-RUN mkdir -p /home/integral/.jupyter/
-ADD jupyter_notebook_config.json /home/integral/.jupyter/jupyter_notebook_config.json
-EXPOSE 8888
 
-ADD init.sh
+ADD init.sh init.sh
 

init.sh

-export HEADAS=/heasoft/x86_64-unknown-linux-gnu-libc2.17/
+export HEADAS=/opt/heasoft/x86_64-unknown-linux-gnu-libc2.17/
 source $HEADAS/headas-init.sh
 
-rm -rf $HOME/pfiles
-export ISDC_ENV=/osa
+export ISDC_ENV=/opt/osa11
 source $ISDC_ENV/bin/isdc_init_env.sh
 
-export CURRENT_IC=/data/ic_tree_current
-export REP_BASE_PROD=/data/rep_base_prod
+source /opt/root/bin/thisroot.sh
 
-export F90=gfortran #f95
-export F95=gfortran #f95
-export F77=gfortran #f95
-export CC="gcc44" # -Df2cFortran"
-export CXX="g++44" # -Df2cFortran"
-source $HOME/root/bin/thisroot.sh
+#export CURRENT_IC=/data/ic_tree_current
+#export REP_BASE_PROD=/data/rep_base_prod
 
-
-source heasoft_init.sh
-
-sh setup_curlftpfs.sh
-mkdir -p /data/rep_base_prod/scw
-
-echo "mounting.."
-#curlftpfs -o nonempty ftp://isdcarc.unige.ch/arc/rev_3/aux/ /data/rep_base_prod/aux
-#curlftpfs -o nonempty ftp://isdcarc.unige.ch/arc/rev_3/scw/ /data/rep_base_prod/scw
-
-
-#ls /data/rep_base_prod/scw/0665
-#ls -l /data/ic_tree_current/ic/ibis/mod/isgr_mask_mod_0003.fits
-
-#ls -l /data/rep_base_prod/scw/0665/066500230010.001
+#export F90=gfortran #f95
+#export F95=gfortran #f95
+#export F77=gfortran #f95
+#export CC="gcc44" # -Df2cFortran"
+#export CXX="g++44" # -Df2cFortran"
 
 

run.sh

+mkdir -pv /tmp/osa-home-$$
+mkdir -pv /tmp/osa-home-$$-pfiles
+
+docker run \
+    -e DISPLAY=$DISPLAY \
+    -v /tmp/.X11-unix:/tmp/.X11-unix \
+    -v /tmp/osa-home-$$-pfiles:/pfiles \
+    -v /tmp/osa-home-$$:/home/integral \
+    --rm -it --user $(id -u) \
+        integralsw/osa:11.0 bash -c 'export HOME=/home/integral; source init.sh; ibis_science_analysis'